sctour.predict.predict_time

sctour.predict.predict_time(model: sctour.train.Trainer, adata: anndata._core.anndata.AnnData, reverse: bool = False) → numpy.ndarray

Predict the pseudotime for query cells.

Parameters

• model – A sctour.train.Trainer for trained scTour model.

• adata – An AnnData object for the query dataset.

• reverse – Whether to reverse the predicted pseudotime. When the pseudotime returned by get_time() function for the training data was in reverse order and you used the post-inference adjustment (reverse_time() function), please set this parameter to True. (Default: False)

Returns

The pseudotime predicted for the query cells.

Return type

ndarray